Use case gallery - Amira-Avizo Software

Featured articles of Thermo Scientific 3D image analysis software

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, or presentations that show how Amira Software and Avizo Software are used to address various scientific and industrial research topics.

Select an industry and then applications or type in a search term to see cases related to specific topics you are interested in.

Industry

Applications

A high-throughput semi-automated bone segmentation workflow for murine hindpaw Micro-CT datasets

H. Mark Kenney, Yue Peng, Kiana L.Chen, Raquel Ajalik, Lindsay Schnur, Ronald W.Wood, Edward M.Schwarz, Hani A. Awad

Protocols for Generating Surfaces and Measuring 3D Organelle Morphology Using Amira

Edgar Garza-Lopez, Zer Vue, Prasanna Katti, Kit Neikirk, Michelle Biete, Jacob Lam, Heather K. Beasley, Andrea G. Marshall, Taylor A….

The molecular basis for sarcomere organization in vertebrate skeletal muscle

Zhexin Wang, Michael Grange, Thorsten Wagner, Ay Lin Kho, Mathias Gautel, Stefan Raunser

Automatic whole cell organelle segmentation in volumetric electron microscopy

Larissa Heinrich, Davis Bennett, David Ackerman, Woohyun Park, John Bogovic, View ORCID ProfileNils Eckstein, Alyson Petruncio, Jody Clements, C. Shan…

Imaging Fibroblast Activation Protein Alpha Improves Diagnosis of Metastatic Prostate Cancer with Positron Emission Tomography

Hallie M. Hintz, Joseph P. Gallant, Donald J. Vander Griend, Ilsa M. Coleman, Peter S. Nelson and Aaron M. LeBeau

Interconnectivity Explains High Canalicular Network Robustness between Neighboring Osteocyte Lacunae in Human Bone

Emely Bortel, Liam M Grover, Neil Eisenstein, Christian Seim, Heikki Suhonen, Alexandra Pacureanu, Peter Westenberger, Kay Raum, Max Langer, Francoise…

Optical tissue clearing and machine learning can precisely characterize extravasation and blood vessel architecture in brain tumors

Serhii Kostrikov, Kasper B. Johnsen, Thomas H. Braunstein, Johann M. Gudbergsson, Frederikke P. Fliedner, Elisabeth A. A. Obara, Petra Hamerlik,…

The development of a high throughput drug-responsive model of white adipose tissue comprising adipogenic 3T3-L1 cells in a 3D matrix

Alexander D Graham, Rajesh Pandey, Viktoriya S Tsancheva, Alessia Candeo, Stanley W Botchway, Alasdair J Allan, Lydia Teboul4, Kamel Madi,…

Optical Resolution Photoacoustic Microscopy of Ovary and Fallopian Tube

Bin Rao, Xiandong Leng, Yifeng Zeng, Yixiao Lin, Ruimin Chen, Qifa Zhou, Andrea R. Hagemann, Lindsay M. Kuroki, Carolyn K….

Nanoscale state-of-charge heterogeneities within polycrystalline nickel-rich layered oxide cathode materials

ChunTan, Andrew S.Leach, Thomas M.M. Heenan, Huw Parks, Rhodri Jervis, Johanna Nelson Weker, Daniel J.L. Brett, Paul R.Shearing

In situ x-ray computed tomography of zinc–air primary cells during discharge: correlating discharge rate to anode morphology

Jennifer Hack, Drasti Patel, Josh J Bailey, Francesco Iacoviello, Paul R Shearing, and Dan J L Brett

Seeing through nuclear fuel: Three-dimensional, nondestructive X-ray microscopy and volumetric analyses of neutron-irradiated TRISO-coated fuel kernels

Nikolaus L. Cordes, William C. Chuirazzi & Joshua J. Kane – John D. Stempien

For Research Use Only. Not for use in diagnostic procedures.